

@2523

10 years 
Peter 
added function to retrieve stored oddsratio in Fisher



@2516

10 years 
Peter 
use compiler generated constructor



@2515

10 years 
Peter 
avoid inline



@2514

10 years 
Peter 
correct includes



@2513

10 years 
Peter 
prefer init member variables



@2512

10 years 
Peter 
avoid inlining



@2511

10 years 
Peter 
docs typo



@2510

10 years 
Peter 
added TukeyBiweightEstimator?. closes #666



@2509

10 years 
Peter 
avoid inlined funtions



@2508

10 years 
Peter 
adding a functor calculating Tukey Biweight. refs #666



@2506

10 years 
Peter 
remove dead declaritions



@2503

10 years 
Peter 
avoid long line



@2502

10 years 
Peter 
mad: avoid copying data



@2496

10 years 
Peter 
benjaminihochberg: avoid crash when input is empty range. Speedup …



@2482

11 years 
Peter 
new class GFF. closes #647



@2480

11 years 
Peter 
improve error message



@2476

11 years 
Peter 
new function benjamini_hochberg. closes #293



@2472

11 years 
Peter 
fixed some docs errors



@2470

11 years 
Peter 
merge patch release 0.7.2 into trunk



@2459

11 years 
Peter 
make exception inherit from yat::utility::runtime_error rather than …



@2458

11 years 
Peter 
Always detect 'help' (fixes #637). Change CommandLine::parse so the …



@2451

11 years 
Peter 
update copyright years



@2443

11 years 
Peter 
simplify code



@2441

11 years 
Peter 
docs typo



@2435

11 years 
Peter 
include version.h in distribution as it is no longer built (refs #2431)



@2434

11 years 
Peter 
remove svn prop 'svn:executable' from split.cc and split.h



@2433

11 years 
Peter 
remove stray lines



@2432

11 years 
Peter 
merge r2430 from 0.7stable to trunk in order to avoid doxygen warning …



@2431

11 years 
Peter 
fixes #620. Move version defines from 'version.h' to …



@2426

11 years 
Peter 
closes #656: convert from numeric to string



@2415

11 years 
Peter 
improve Centralizer docs. fixes #652



@2414

11 years 
Peter 
correct include as mandated by our coding guideline



@2411

11 years 
Peter 
merge patch release 0.7.1 into trunk



@2389

11 years 
Peter 
adding some missing since tags



@2388

11 years 
Peter 
add doxygen tag relates



@2387

11 years 
Peter 
avoid long lines



@2386

11 years 
Peter 
avoid referring to data file in a function that works on a stream



@2385

11 years 
Peter 
doc typo



@2384

11 years 
Peter 
updating copyright years



@2382

11 years 
Peter 
merged patch release 0.6.3 into trunk.



@2377

11 years 
Peter 
docs typo



@2375

11 years 
Peter 
improve docs for WeightedIterator? and DataWeightProxy? and add some …



@2374

11 years 
Peter 
changing value_type to const double (or const DataWeight?) in …



@2373

11 years 
Peter 
adding docs on type requirements in Container2DIterator. Adding some …



@2372

11 years 
Peter 
adding concept checks merge



@2371

11 years 
Peter 
adding concept checks in RowNormalizer? and ColumnNormalizer?



@2369

11 years 
Peter 
fixes some issues in class Codon and extending tests



@2368

11 years 
Peter 
new class omic::Codon



@2366

11 years 
Peter 
New class GenomicPosition?



@2365

11 years 
Peter 
refs #623



@2363

11 years 
Peter 
fixing some leftover errors. refs #640



@2362

11 years 
Peter 
more tests for SegmentMap?. closes #640



@2361

11 years 
Peter 
base class should always have virtual destructor (or nonvirtual …



@2360

11 years 
Peter 
refs #640. adding a functor in SegmentTree? to tranlate a value_type to …



@2359

11 years 
Peter 
New functor Identity that returns passed argument



@2358

11 years 
Peter 
move most of SegmentSet? impl to a base class SegmentTree? and implement …



@2357

11 years 
Peter 
use compare(Segment, Segment) as comparator in SegmentSet? which allows …



@2356

11 years 
Peter 
adding more types required to conform to 'Unique Sorted Associated …



@2355

11 years 
Peter 
added some more types to SegmentSet?'s public interface



@2352

11 years 
Peter 
fixes #645. error message is now: invalid argument bar'



@2351

11 years 
Peter 
remove private function not used anymore



@2348

11 years 
Peter 
allow changing description after construction.



@2347

11 years 
Peter 
avoid double colon (: :) in unrecognized option error message



@2342

11 years 
Peter 
adding missing files. refs #377



@2341

11 years 
Peter 
New namespace omic and new class omic::DNA. closes #377



@2340

11 years 
Peter 
closes #627



@2338

11 years 
Peter 
adding an archetype class for distance concept and use that class in …



@2337

11 years 
Peter 
missing includes



@2336

11 years 
Peter 
prefer lines shorter than 80 characters (again)



@2335

11 years 
Peter 
prefer lines shorter than 80 characters



@2334

11 years 
Peter 
fixes #625



@2333

11 years 
Peter 
fixes #556



@2331

11 years 
Peter 
adding missing since tag



@2330

11 years 
Peter 
tiny docs typo



@2325

11 years 
Peter 
prefer using std::swap and avoid long lines



@2324

11 years 
Peter 
new class KernelPCA. closes #639



@2323

11 years 
Peter 
removing some outcommented code and avoid using namespace ::utility …



@2321

11 years 
Peter 
adding missing include



@2316

11 years 
Peter 
remove includes not needed



@2313

11 years 
Peter 
minor doc typo



@2311

11 years 
Peter 
porting r2310 to trunk. Fixing warnings from doxygen 1.7.1 so 'make …



@2305

11 years 
Peter 
new function: split(3)



@2303

11 years 
Peter 
missing include



@2302

11 years 
Peter 
using boost function in to_lower and to_upper to make them respect the …



@2296

11 years 
Peter 
class SegmentSet?: added function clear and fixed bug in insert. …



@2294

11 years 
Peter 
refs #635. fix return type (int) in compare_3way and add some more …



@2293

11 years 
Peter 
adding a function that takes intersection of two Sections. refs #635



@2292

11 years 
Peter 
always use Compare functor in Segment (not std::less)



@2291

11 years 
Peter 
refs #635. New classes Segment and SegmentSet?.



@2290

11 years 
Peter 
fixing type. files belong to yat



@2288

11 years 
Peter 
avoid confusing doxygen



@2287

11 years 
Peter 
hide private class in docs (fixes #628) and chnage docs to point to …



@2286

11 years 
Peter 
replace class PtrCompare? with two function make_ptr_compare that …



@2285

11 years 
Peter 
adding a class Dereferencer, a functor that returns *argument. refs #632



@2284

11 years 
Peter 
fix doc typo



@2283

11 years 
Peter 
fix Centralizer so it works with mixed iterators. Make it clear that …



@2282

11 years 
Peter 
document and test that DataIterator? and WeightIterator? works …



@2278

11 years 
Peter 
corrected comment reflecting that we do implement assignment in …



@2275

11 years 
Peter 
improve docs for compose_functors



@2274

11 years 
Peter 
adding functor f_gxy and f_gx (similar to f_gx_hy) and adding some …


